Preheat your oven to 350°F. Generously grease a standard 12-cup muffin tin with butter or nonstick cooking spray to prevent sticking.
Cook the bacon in a skillet over medium heat until crispy. Transfer it to a paper towel-lined plate to drain, then chop into bite-sized pieces.
In a large mixing bowl, whisk together the eggs, milk, maple syrup, brown sugar, and vanilla bean paste until combined.
Add the cottage cheese and pancake mix. Stir gently until just combined. A few small lumps are perfectly fine. Avoid overmixing, which can make the muffins dense.
Fold in most of the shredded cheddar cheese and chopped bacon, reserving a little of each for topping.
Divide the batter evenly among the prepared muffin cups, filling each approximately three-quarters full. Sprinkle the remaining bacon and cheddar cheese over the tops.
Bake for approximately 18–20 minutes, or until the muffins are golden brown, puffed up, and a toothpick inserted into the center comes out without wet batter. The centers should be fully set.
Allow the muffins to cool in the pan for about 5 minutes before carefully removing them.
Serve warm with an extra drizzle of pure maple syrup and enjoy!